2024 Plantphonedb github

Plantphonedb github

Author: oxtv

August undefined, 2024

WebBackground: In plants, the plasma membrane is enclosed by the cell wall and anchors RLK and RLP proteins, which play a fundamental role in perception of developmental and environmental cues and are...

LR_pathway : Construction of intracellular signaling pathway

WebClone via HTTPS Clone with Git or checkout with SVN using the repository’s web address. WebDownload scientific diagram Correspondence table containing the available L-R gene information for each organism For each detected CaH, gene annotation, enrichment analysis, tissue-or cell-type ... fitzgerald bagel thins

Releases · Jasonxu0109/PlantPhoneDB · GitHub

WebAug 12, 2024 · PlantPhoneDB v1.0.0 Pre-release. A manually curated pan-plant database of ligand-receptor pairs infers cell-cell communication. Assets 5. WebRecent single-cell RNA-sequencing technologies have enabled the detection of CCIs and related ligand-receptor (L-R) gene expression simultaneously. However, previous data analysis methods have... WebJan 2, 2024 · PlantPhoneDB in R Package index Search the Jasonxu0109/PlantPhoneDB package Vignettes README.md Functions 12 Source code 5 Man pages 6 CCI_circle: … fitzgerald background

PlantPhoneDB: A manually curated pan-plant database of ligand-receptor

References — PlantPhoneDB-Tutorial v1.0.0 documentation - Read …

WebIn conclusion, PlantPhoneDB provided researchers with an integrated resources to infer cell-cell communication from scRNA-seq datasets. COLLEGE OF THE ENVIRONMENT & ECOLOGY, XIAMEN UNIVERSITY... WebJul 16, 2024 · PlantPhoneDB: A manually curated pan-plant database of ligand-receptor pairs infers cell–cell communication. Chaoqun Xu, Chaoqun Xu. Key Laboratory of the … can i have robux in spanishWebJul 16, 2024 · At the PlantPhoneDB web interface, the processed datasets and results can be searched, browsed, and downloaded. To uncover novel cell–cell communication events in plants, we applied the PlantPhoneDB R package on GSE121619 dataset to infer significant cell–cell interactions of heat-shocked root cells in Arabidopsis thaliana. can i have rice in vietnamese

"WebDocument — PlantPhoneDB-Tutorial v1.0.0 documentation Document Edit on GitHub Document We provide the R script needed to reproduce the processed scRNA-seq datasets results of PlantPhoneDB. Quick Installation First, install devtools (for installing GitHub packages) if it isn’t already installed: " - Plantphonedb github

Plantphonedb github

PlantPhoneDB: A manually curated pan-plant database of ligand …

WebDownload scientific diagram Overview of PlantGSAD functions. (A) Example of gene search results in PlantGSAD. In the first column, the background color represents the gene set category. (B) Gene ... WebJan 2, 2024 · Functional category enrichment analysis Description. Functional category enrichment analysis Usage LRTargetFisher(Targets, GeneSets, TotalGene) Arguments

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WebDec 9, 2024 · CellPhoneDB is a publicly available repository of curated receptors, ligands and their interactions. Subunit architecture is included for both ligands and receptors, … WebPlantPhoneDB: A manually curated pan-plant database of ligand-receptor pairs infers cell-cell communication. ( Plant Biotechnology Journal ; Impact Factor 13.263 ; accepted ) …

WebOct 31, 2024 · PlantPhoneDB: a manually curated pan-plant database of ligand-receptor pairs infers cell-cell communication. Getting started README.md Browse package … WebJan 2, 2024 · lr: A data frame of the ligand-receptor interactions. objs: object Seurat object. CellA: Ligands cell. CellB: Receptors cell. neighbor: Represents the second-order neighbors of ligand-receptor pair in the signaling network.Default is 2.

WebEdit on GitHub. PlantPhoneDB is a ligand-receptor interactions database, which aims to infer cell-cell communications from scRNA-seq datasets in plant. We built the PlantPhoneDB … WebAbout — PlantPhoneDB-Tutorial v1.0.0 documentation PlantPhoneDB-Tutorial latest Overview Home Search Explorer Download References Document About Case Studies …

WebAug 7, 2024 · 从结果可以看出，PlantPhoneDB可以预测出有显著通讯活性的AT1G28290-AT2G14890配体-受体互作对，该配体-受体互作对所调控的靶基因富集到核糖体通路。热胁迫可能会引起核糖体暂停现象，这种热触发的 mRNA 降解似乎是植物在慢性热胁迫下适应和生存所必需的。

WebOct 31, 2024 · PlantPhoneDB: A manually curated pan-plant database of ligand-receptor pairs infers cell-cell communication. ( Plant Biotechnology Journal ; Impact Factor 13.263 … fitzgerald bandsaw service windhamWebJan 2, 2024 · expr: A data frame or matrix of n rows (genes) and m columns (cells) normalized by SCTransform(). LRdb: A dataset with ligand-receptor pairs, such as LR_pair_ath.RDa. can i have rice on the daniel fastWebJan 7, 2024 · Here, we used single-cell RNA sequencing to investigate BS differentiation in C4maize (Zea mays L.) plants. Abaxial BS (abBS) cells of rank-2 intermediate veins specifically expressed three SWEET sucrose uniporters (SWEET13a, b, and c) and UmamiT amino acid efflux transporters. SWEET13a, b, cmRNAs were also detected in the phloem … can i have rheumatoid arthritis and lupusWebAs a result, the PlantPhoneDB predicted the actively communicating AT1G28290‐AT2G14890 ligand‐receptor pair in Atrichoblast‐Cortex cell pair in Arabidopsis thaliana. Importantly, the ... fitzgerald bassey consultancy limitedWebWith a personal account on GitHub, you can import or create repositories, collaborate with others, and connect with the GitHub community. Getting started with GitHub Team With GitHub Team groups of people can collaborate across many projects at the same time in an organization account. can i have rice on paleoWebJul 30, 2024 · Europe PMC is an archive of life sciences journal literature. fitzgerald baker morris firthWebEdit on GitHub References We manually reviewed and confirmed 23 peer-reviewed publications and 4 preprints, and collected the information of 29 scRNA-seq datasets, including ~560,000 cells of 15 tissues from 5 plant species, including Arabidopsis thaliana, Oryza sativa, Populus alba x Populus glandulosa, Solanum lycopersicum and Zea mays. can i have rotel on keto